Newsweek's N'Gai Croal, who you may remember hating for his shockingly-worded preference of 2D Metroid, still really likes Metroid Prime 3. In fact, he likes it so much he came up with an alternate button placement on the Wiimote for ideal Prime playing, one that puts the - and + buttons around the A button like the GameCube's layout. He even suggested, during the same discussion that sparked the original outrage, that Nintendo could have shipped such a 'special edition' Wiimote with the game. He backed up this discussion with a Photoshopped Wiimote that Newsweek put together.
We think that's a pretty fun idea, despite being a collector's nightmare. If the function of the thing doesn't really change, why not let people spend their money on weird one-off controllers? It's no different than, say, the Guitar Hero controller or the $200 Steel Battalion doodad, except that it could still be used with other games.