The questions run across the board, with a large chunk devoted to future content: More bridge officer features? (Season Four.) New weekly episodes? (January, with more to follow.) Better deep space encounters? (The team is overhauling these after Season Three.) The ability to join factions? (Possible, such as a Ferengi trader faction.)
Stahl also admits that there are "too many currencies" in the game at the moment, and the team will be paring those down. One of the most requested features by players is the addition of the classic Enterprise bridge layout from the 1960's series, and it looks as though Cryptic will be delivering: "I can see this getting done in the next several updates."
And if you are among the crowd predicting that STO will quickly follow in Champions Online's F2P footsteps, it doesn't appear to be in the works (at least, not yet): "We're very excited to see Champs go F2P but this has no direct impact on Star Trek Online. Our subscription and C-Store model will continue forward without changes."