Is there a way to "batch-match" a bunch of time lapse photos that have slightly different focal areas?
I'd re-shoot but it's not cheap to fly back to Tokyo. Ugh.
Have you ever tried Photoshop's batch automation feature? I use it all the time for large projects. I'd give you a step-by-step, but I'm lazy and this will explain it better.
Also, I'm not sure how many layers you're using, but "Auto-align layers" should help
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